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"true_copies_per_100": 12.5, "detected": true, "reported_fragments": 123, "reported_copies_per_100": 10.9831, "mean_identity": 99.4, "classification": "TP", "true_copies_residue_filtered": 12.5, "reported_copies_residue_consistent": null }, { "entry_key": "ipa:FLDBC", "panel": "ipa", "gene": "fldBC", "truly_present": true, "true_copies_per_100": 41.6667, "detected": true, "reported_fragments": 165, "reported_copies_per_100": 17.2215, "mean_identity": 99.5, "classification": "TP", "true_copies_residue_filtered": 41.6667, "reported_copies_residue_consistent": null }, { "entry_key": "ipa:FLDH", "panel": "ipa", "gene": "fldH", "truly_present": true, "true_copies_per_100": 8.3333, "detected": true, "reported_fragments": 84, "reported_copies_per_100": 10.781, "mean_identity": 89.2, "classification": "TP", "true_copies_residue_filtered": 8.3333, "reported_copies_residue_consistent": null }, { "entry_key": "pcresol:HPDB", "panel": "pcresol", "gene": "hpdB", "truly_present": true, "true_copies_per_100": 25.0, "detected": true, "reported_fragments": 217, "reported_copies_per_100": 10.5915, "mean_identity": 92.0, "classification": "TP", "true_copies_residue_filtered": 25.0, "reported_copies_residue_consistent": null }, { "entry_key": "propionate:PCT", "panel": "propionate", "gene": "pct", "truly_present": true, "true_copies_per_100": 8.3333, "detected": true, "reported_fragments": 257, "reported_copies_per_100": 20.1993, "mean_identity": 83.4, "classification": "TP", "true_copies_residue_filtered": 8.3333, "reported_copies_residue_consistent": null }, { "entry_key": "propionate:PDUP", "panel": "propionate", "gene": "pduP", "truly_present": true, "true_copies_per_100": 8.3333, "detected": true, "reported_fragments": 218, "reported_copies_per_100": 19.3429, "mean_identity": 81.0, "classification": "TP", "true_copies_residue_filtered": 8.3333, "reported_copies_residue_consistent": null }, { "entry_key": "propionate:LCDA", "panel": "propionate", "gene": "lcdA", "truly_present": false, "true_copies_per_100": 0.0, "detected": true, "reported_fragments": 144, "reported_copies_per_100": 20.2498, "mean_identity": 66.2, "classification": "FP", "true_copies_residue_filtered": 0.0, "reported_copies_residue_consistent": null }, { "entry_key": "urda:URDA", "panel": "urda", "gene": "urdA", "truly_present": true, "true_copies_per_100": 75.0, "detected": true, "reported_fragments": 1953, "reported_copies_per_100": 126.7962, "mean_identity": 87.7, "classification": "TP", "true_copies_residue_filtered": 29.1667, "reported_copies_residue_consistent": 50.735 } ] }, { "name": "negative", "description": "6 abundant gut organisms with no known carriage of the target genes. 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This is the experiment that measures the false-positive rate directly.", "n_read_pairs": 3000000, "community": [ { "label": "btheta", "organism": "Bacteroides thetaiotaomicron", "accession": "GCF_014131755.1", "cell_fraction": 0.166667, "genome_size": 6304193 }, { "label": "pcopri", "organism": "Segatella copri DSM 18205", "accession": "GCF_020735445.1", "cell_fraction": 0.166667, "genome_size": 3551614 }, { "label": "amuciniphila", "organism": "Akkermansia muciniphila", "accession": "GCF_009731575.1", "cell_fraction": 0.166667, "genome_size": 2878459 }, { "label": "badolescentis", "organism": "Bifidobacterium adolescentis ATCC 15703", "accession": "GCF_000010425.1", "cell_fraction": 0.166667, "genome_size": 2089645 }, { "label": "blongum", "organism": "Bifidobacterium longum subsp. longum JCM 1217", "accession": "GCF_000196555.1", "cell_fraction": 0.166667, "genome_size": 2385164 }, { "label": "sthermophilus", "organism": "Streptococcus thermophilus", "accession": "GCF_903886475.1", 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